Function reference • perturbplan

Pilot data preprocessing functions

These functions help users create custom pilot data.

reference_data_preprocessing_10x(): Aggregate Expression and QC Data from Multiple SRR-Level Cell Ranger Outputs

reference_data_processing(): Extract Statistical Parameters from Pilot Data for Power Analysis

Example data

Pilot datasets used by default in the app.

K562_Gasperini: K562 Gasperini reference data for CRISPR power analysis

K562_10x: K562 10x Genomics reference data for CRISPR power analysis

K562_Ray: K562 Ray TAP-seq reference data for CRISPR power analysis

A549_Sakellaropoulos: A549 Sakellaropoulos Chromium reference data for CRISPR power analysis

THP1_Yao: THP-1 Yao reference data for CRISPR power analysis

T_CD8_Shifrut: T_CD8 Shifrut reference data for CRISPR power analysis

iPSC_Tian: iPSC Tian reference data for CRISPR power analysis

iPSC_neuron_Tian: iPSC-derived neuron Tian reference data for CRISPR power analysis