PerturbPlan is an R package for power analysis in perturb-seq and TAP-seq experiments. It complements the PerturbPlan web app, which provides an interactive interface for experimental design. At present, the PerturbPlan package’s primary function is to prepare reference data for the web app: Shiny app users wishing to provide custom reference data to the app should use the package to prepare their data before upload. In the future, this package will include functionality to carry out more sophisticated experimental design analyses than those supported by the web app.
Installation
You can install PerturbPlan from GitHub:
# install.packages("devtools")
devtools::install_github("Katsevich-Lab/perturbplan")