The data getter functions (i.e., get_response_matrix(), get_grna_matrix(), get_cell_covariates()) return of a specified data field from a sceptre_object.
Usage
get_response_matrix(sceptre_object)
get_grna_matrix(sceptre_object)
get_cell_covariates(sceptre_object)Value
get_response_matrix() returns the response matrix contained within a sceptre_object.
get_grna_matrix() returns the gRNA matrix contained within a sceptre_object.
get_cell_covariates() returns the cell covariate data frame contained within a sceptre_object.
Examples
# 1. create a sceptre_object
library(sceptredata)
data(highmoi_example_data)
data(grna_target_data_frame_highmoi)
sceptre_object <- import_data(
response_matrix = highmoi_example_data$response_matrix,
grna_matrix = highmoi_example_data$grna_matrix,
grna_target_data_frame = grna_target_data_frame_highmoi,
moi = "high",
extra_covariates = highmoi_example_data$extra_covariates,
response_names = highmoi_example_data$gene_names
)
# 2. extract data fields from the sceptre_object
response_matrix <- get_response_matrix(sceptre_object)
grna_matrix <- get_grna_matrix(sceptre_object)
cell_covariates <- get_cell_covariates(sceptre_object)