gene_position_data_frame_grch38 and gene_position_data_frame_grch37 contain the coordinate and transcription start site position of each gene relative to reference genome GRCh38 and GRCh37, respectively. Both gene_position_data_frame_grch38 and gene_position_data_frame_grch37 were constructed from reference genomes available on the 10x Genomics website. The GRCh38 reference genome has been used by 10x Cell Ranger since 2020.
Format
An object of class data.table (inherits from data.frame) with 36572 rows and 4 columns.
An object of class data.table (inherits from data.frame) with 57773 rows and 4 columns.
Examples
head(gene_position_data_frame_grch38)
#> response_id response_name chr position
#> <char> <char> <fctr> <int>
#> 1: ENSG00000243485 MIR1302-2HG chr1 29554
#> 2: ENSG00000237613 FAM138A chr1 36081
#> 3: ENSG00000186092 OR4F5 chr1 65419
#> 4: ENSG00000239945 AL627309.3 chr1 91105
#> 5: ENSG00000238009 AL627309.1 chr1 133723
#> 6: ENSG00000239906 AL627309.2 chr1 140339
head(gene_position_data_frame_grch37)
#> response_id response_name chr position
#> <char> <char> <fctr> <int>
#> 1: ENSG00000223972 DDX11L1 chr1 11869
#> 2: ENSG00000227232 WASH7P chr1 29806
#> 3: ENSG00000243485 MIR1302-10 chr1 29554
#> 4: ENSG00000237613 FAM138A chr1 36081
#> 5: ENSG00000268020 OR4G4P chr1 52473
#> 6: ENSG00000240361 OR4G11P chr1 62948